Index

_

__init__() (pybiographs.covid_data.CovidData method) (pybiographs.graphs.InteractionGraph method)

C

classify_tissue_by_node_expression() (pybiographs.graphs.InteractionGraph method)

CovidData (class in pybiographs.covid_data)

G

get_nodes_by_sequence_regex() (pybiographs.graphs.InteractionGraph method)

I

info_sequence_regex() (pybiographs.graphs.InteractionGraph method)

InteractionGraph (class in pybiographs.graphs) is_directed (pybiographs.graphs.InteractionGraph attribute)

M

Mappings (class in pybiographs.mappings) metabolites_regex() (pybiographs.graphs.InteractionGraph method)

most_present_biological_processes() (pybiographs.graphs.InteractionGraph method) most_present_cellular_components() (pybiographs.graphs.InteractionGraph method)

O

ontology_regex() (pybiographs.graphs.InteractionGraph method)

OntologyGraph (class in pybiographs.graphs)

P

pathway_regex() (pybiographs.graphs.InteractionGraph method) PPGCN (in module pybiographs.dl_models.graph_dl_model)

PPInteractionDataset (in module pybiographs.dl_models.torch_datasets) print_sub_graph_nodes() (pybiographs.graphs.InteractionGraph method) propagate_node() (pybiographs.graphs.InteractionGraph method)

R

recurrent_ontology_query() (pybiographs.graphs.InteractionGraph method)

remove_edges_by_threshold() (pybiographs.graphs.InteractionGraph method) restrict_by_tissue_threshold() (pybiographs.graphs.InteractionGraph method)

S

sub_graph_by_node_ontology_search() (pybiographs.graphs.InteractionGraph method)

sub_graph_by_node_regex_search() (pybiographs.graphs.InteractionGraph method) sub_graph_from_node_propagation() (pybiographs.graphs.InteractionGraph method)